Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM131069v1

Organism name:

Vibrio sp. JCM 19061 (g-proteobacteria)

Taxonomy check:

Infraspecific name:

Strain: JCM 19061

BioSample:

SAMD00000392

BioProject:

PRJDB1713

Submitter:

The University of Tokyo

Date:

2015/10/02

Assembly type:

Assembly level:

Contig

Genome representation:

full

Excluded from RefSeq:

many frameshifted proteins

GenBank assembly accession:

GCA_001310695.1 (latest)

RefSeq assembly accession:

GCF_001310695.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

BAXU01

Assembly method:

Newbler v. 2.8

Genome coverage:

15x

Sequencing technology:

Ion PGM

IDs: 500661 [UID] 2387388 [GenBank] 2394248 [RefSeq]

See Genome Information for Vibrio sp. JCM 19061

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001310695.1	=	GCF_001310695.1	ASM131069v1	Contig	Latest GenBank, RefSeq suppressed

Comment

This work had been advanced in the National BioResource Project(NBRP) supported by the Ministry of Education, Culture, Sports, Science and Technology of Japan(MEXT) as NBRP Genome Information Upgrading Program.
Source DNA and bacteria available from Microbe Division/JCM, RIKEN BioResource Center.
http://www.jcm.riken.go.jp/
Genome ... sequencing done by Center for Omics and Bioinformatics, Graduate School of Frontier Sciences, University of Tokyo. http://www.cb.k.u-tokyo.ac.jp/hattorilab/

  more

Global statistics

Total sequence length	5,079,784
Total ungapped length	5,079,784
Number of contigs	118
Contig N50	124,056
Contig L50	15
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	118

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	98.49	93.87	92.65

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM131069v1

See Genome Information for Vibrio sp. JCM 19061

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result