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ASM129433v1

Organism name:
Streptomyces chattanoogensis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NRRL ISP-5002
BioSample:
SAMN03327492
BioProject:
PRJNA238534
Submitter:
University of Illinois at Urbana-Champaign
Date:
2015/09/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001294335.1 (latest)
RefSeq assembly accession:
GCF_001294335.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LGKG01
Assembly method:
IDBA_UD v. FEB-2013
Expected final version:
yes
Genome coverage:
142.0x
Sequencing technology:
Illumina HiSeq

IDs: 486461 [UID] 2326918 [GenBank] 2336948 [RefSeq]

See Genome Information for Streptomyces chattanoogensis

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/17/2015 09:47:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::8,056
CDS::7,427
Pseudo Genes::534
rRNAs::7 (5S, 16S, 23S)
tRNAs::67
ncRNA::21
Frameshifted Genes::116
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,129,105
Total ungapped length9,129,105
Number of contigs217
Contig N50166,063
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)217

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,129,1052179,129,105166,06300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces chattanoogensisStreptomyces chattanoogensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003389455.1Streptomyces inhibenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.9850.8348.96

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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