U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM127976v1

Organism name:
Streptomyces sp. XY413 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: XY413
BioSample:
SAMN02900626
BioProject:
PRJNA238534
Submitter:
University of Illinois at Urbana-Champaign
Date:
2015/09/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001279765.1 (latest)
RefSeq assembly accession:
GCF_001279765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LGDP01
Assembly method:
IDBA_UD v. SEP-2013
Expected final version:
yes
Genome coverage:
36.0x
Sequencing technology:
Illumina HiSeq

IDs: 479021 [UID] 2309208 [GenBank] 2310848 [RefSeq]

See Genome Information for Streptomyces sp. XY413

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/13/2015 17:53:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::7,721
CDS::6,835
Pseudo Genes::803
CRISPR Arrays::2
rRNAs::6 (5S, 16S, 23S)
tRNAs::72
ncRNA::5
Frameshifted Genes::102
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,565,282
Total ungapped length8,565,282
Number of contigs255
Contig N50114,603
Contig L5026
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)255

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,565,2822558,565,282114,60300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. XY413Streptomyces sp. XY413

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000720455.1Streptomyces virginiaesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.2090.2992.97

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna