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ASM127965v1

Organism name:
Streptomyces sp. WM6372 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: WM6372
BioSample:
SAMN02900617
BioProject:
PRJNA238534
Submitter:
University of Illinois at Urbana-Champaign
Date:
2015/09/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001279655.1 (latest)
RefSeq assembly accession:
GCF_001279655.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LGDB01
Assembly method:
IDBA_UD v. SEP-2013
Expected final version:
yes
Genome coverage:
80.0x
Sequencing technology:
Illumina HiSeq

IDs: 478971 [UID] 2309108 [GenBank] 2310768 [RefSeq]

See Genome Information for Streptomyces sp. WM6372

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/13/2015 17:48:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::7,863
CDS::6,964
Pseudo Genes::804
rRNAs::12 (5S, 16S, 23S)
tRNAs::72
ncRNA::11
Frameshifted Genes::88
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,763,196
Total ungapped length8,763,196
Number of contigs259
Contig N5091,629
Contig L5030
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)259

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,763,1962598,763,19691,62900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. WM6372Streptomyces sp. WM6372

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008704935.1Streptomyces vinaceustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.9370.5680.58

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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