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ASM127910v1

Organism name:
Streptomyces rimosus subsp. rimosus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NRRL WC-3873
BioSample:
SAMN02900605
BioProject:
PRJNA238534
Submitter:
University of Illinois at Urbana-Champaign
Date:
2015/09/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001279105.1 (latest)
RefSeq assembly accession:
GCF_001279105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LGCS01
Assembly method:
IDBA_UD v. SEP-2013
Expected final version:
yes
Genome coverage:
79.0x
Sequencing technology:
Illumina HiSeq

IDs: 478701 [UID] 2308568 [GenBank] 2313198 [RefSeq]

See Genome Information for Streptomyces rimosus

There are 41 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/13/2015 18:00:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::8,397
CDS::7,432
Pseudo Genes::867
rRNAs::16 (5S, 16S, 23S)
tRNAs::67
ncRNA::15
Frameshifted Genes::111
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,588,334
Total ungapped length9,588,334
Number of contigs365
Contig N5070,517
Contig L5039
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)365

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,588,3343659,588,33470,51700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces rimosus subsp. rimosusStreptomyces rimosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000717285.1Streptomyces rimosus subsp. rimosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000717285.1Streptomyces rimosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.7299.70
Best-match type99.9999.7299.70

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna
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