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ASM127871v1

Organism name:
Acinetobacter sp. TTH0-4 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: CGMCC:1.12996; JCM:30594
Infraspecific name:
Strain: TTH0-4
BioSample:
SAMN04008121
BioProject:
PRJNA293585
Submitter:
Cold and Arid Regions Environmental and Engineering Research Institute
Date:
2015/09/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001278715.1 (latest)
RefSeq assembly accession:
GCF_001278715.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. v2.04
Expected final version:
yes
Genome coverage:
343.0x
Sequencing technology:
PacBio; Illumina

IDs: 478501 [UID] 2308158 [GenBank] 2310028 [RefSeq]

See Genome Information for Acinetobacter sp. TTH0-4

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/25/2023 02:53:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,845
CDSs (total)::2,741
Genes (coding)::2,667
CDSs (with protein)::2,667
Genes (RNA)::104
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::79
ncRNAs::4
Pseudo Genes (total)::74
CDSs (without protein)::74
Pseudo Genes (ambiguous residues)::0 of 74
Pseudo Genes (frameshifted)::21 of 74
Pseudo Genes (incomplete)::55 of 74
Pseudo Genes (internal stop)::17 of 74
Pseudo Genes (multiple problems)::16 of 74
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,962,453
Total ungapped length2,962,453
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001278725.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP012608.1=NZ_CP012608.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,962,453

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter sp. TTH0-4Acinetobacter sp. TTH0-4

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900095025.1Acinetobacter albensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.2284.9782.65

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna