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ASM127809v1

Organism name:
Streptomyces sp. CFMR 7 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CFMR-7
BioSample:
SAMN03463183
BioProject:
PRJNA282459
Submitter:
University Science Malaysia
Date:
2015/09/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001278095.1 (latest)
RefSeq assembly accession:
GCF_001278095.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Genome coverage:
147x
Sequencing technology:
PacBio RS

IDs: 478211 [UID] 2306798 [GenBank] 2307948 [RefSeq]

See Genome Information for Streptomyces sp. CFMR 7

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/10/2023 03:41:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,124
CDSs (total)::7,038
Genes (coding)::6,918
CDSs (with protein)::6,918
Genes (RNA)::86
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::65
ncRNAs::3
Pseudo Genes (total)::120
CDSs (without protein)::120
Pseudo Genes (ambiguous residues)::0 of 120
Pseudo Genes (frameshifted)::39 of 120
Pseudo Genes (incomplete)::93 of 120
Pseudo Genes (internal stop)::10 of 120
Pseudo Genes (multiple problems)::19 of 120
CRISPR Arrays::10
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,307,279
Total ungapped length8,307,279
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001278105.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP011522.1=NZ_CP011522.1
Plasmid unnamedCP011523.1=NZ_CP011523.1

Assembly statistics

MoleculeTotal
Length
All8,307,279
Chromosome 8,207,742
Plasmid unnamed99,537

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. CFMR 7Streptomyces sp. CFMR 7

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006788935.1Streptomyces cavourensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.0083.9990.96

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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