U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM127074v1

Organism name:
Jiangella muralis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 45357
BioSample:
SAMN03801508
BioProject:
PRJNA288523
Submitter:
Yunnan Institute of Microbiology
Date:
2015/08/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001270745.1 (latest)
RefSeq assembly accession:
GCF_001270745.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LFXL01
Assembly method:
SOAPdenovo v. 2.0
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 474401 [UID] 2243328 [GenBank] 2292638 [RefSeq]

See Genome Information for Jiangella muralis

History (Show revision history)

Comment

Global statistics

Total sequence length7,266,157
Total ungapped length7,264,688
Gaps between scaffolds0
Number of scaffolds76
Scaffold N50324,980
Scaffold L508
Number of contigs94
Contig N50174,005
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)94

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,266,157767,264,688324,980180

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Jiangella muralisJiangella muralis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900106035.1Jiangella albatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.4579.5675.23

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected