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ASM127058v1

Organism name:
Streptomyces griseoflavus (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NRRL B-1830
BioSample:
SAMN02900591
BioProject:
PRJNA238534
Submitter:
University of Illinois at Urbana-Champaign
Date:
2015/08/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001270585.1 (latest)
RefSeq assembly accession:
GCF_001270585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LGUW01
Assembly method:
IDBA_UD v. SEP-2013
Expected final version:
yes
Genome coverage:
67.6x
Sequencing technology:
Illumina HiSeq

IDs: 474321 [UID] 2243178 [GenBank] 2292618 [RefSeq]

See Genome Information for Streptomyces griseoflavus

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/29/2015 15:56:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::7,787
CDS::7,247
Pseudo Genes::434
CRISPR Arrays::1
rRNAs::25 (5S, 16S, 23S)
tRNAs::67
ncRNA::14
Frameshifted Genes::102
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,068,791
Total ungapped length9,068,791
Number of contigs382
Contig N5056,727
Contig L5054
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)382

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,068,7913829,068,79156,72700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces griseoflavusStreptomyces griseoflavus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014649995.1Streptomyces griseoflavustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008704655.1Streptomyces rimosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type83.7714.4617.32
Best-match type96.3389.3186.52

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchbest matching type is part of Streptomyces; we treat this group as inconclusive
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