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ASM126788v1

Organism name:
Streptomyces ambofaciens ATCC 23877 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 23877
BioSample:
SAMN03921868
BioProject:
PRJNA93
Submitter:
Dynamique des Genomes et Adaptation Microbienne, Universite de Lorraine, France
Date:
2015/08/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001267885.1 (latest)
RefSeq assembly accession:
GCF_001267885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
CLC workbench v. 7.0.3
Genome coverage:
114
Sequencing technology:
Illumina

IDs: 472931 [UID] 2240228 [GenBank] 2292118 [RefSeq]

See Genome Information for Streptomyces ambofaciens

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/14/2022 10:04:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,524
CDSs (total)::7,432
Genes (coding)::7,217
CDSs (with protein)::7,217
Genes (RNA)::92
rRNAs::5, 6, 6 (5S, 16S, 23S)
complete rRNAs::5, 6, 6 (5S, 16S, 23S)
tRNAs::72
ncRNAs::3
Pseudo Genes (total)::215
CDSs (without protein)::215
Pseudo Genes (ambiguous residues)::0 of 215
Pseudo Genes (frameshifted)::76 of 215
Pseudo Genes (incomplete)::170 of 215
Pseudo Genes (internal stop)::12 of 215
Pseudo Genes (multiple problems)::41 of 215
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,393,598
Total ungapped length8,393,598
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001267895.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP012382.1=NZ_CP012382.1
Plasmid pSAM1CP012383.1=NZ_CP012383.1

Assembly statistics

MoleculeTotal
Length
All8,393,598
Chromosome 8,303,940
Plasmid pSAM189,658

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces ambofaciens ATCC 23877Streptomyces ambofaciens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014649815.1Streptomyces mutabilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.0162.5067.61

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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