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ASM119016v1

Organism name:
Streptomyces fradiae (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: olg1-1
BioSample:
SAMN03890301
BioProject:
PRJNA290327
Submitter:
Vavilov Institute of General Genetics
Date:
2015/07/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001190165.1 (latest)
RefSeq assembly accession:
GCF_001190165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LGSP01
Assembly method:
GS De Novo Assembler v. 3.0
Expected final version:
yes
Genome coverage:
21.0x
Sequencing technology:
454

IDs: 432451 [UID] 2033898 [GenBank] 2187338 [RefSeq]

See Genome Information for Streptomyces fradiae

There are 8 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/27/2015 10:35:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::6,474
CDS::5,781
Pseudo Genes::617
CRISPR Arrays::4
rRNAs::4 (5S, 16S, 23S)
tRNAs::65
ncRNA::7
Frameshifted Genes::77
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,667,096
Total ungapped length7,667,096
Number of contigs208
Contig N5082,381
Contig L5028
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)208

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,667,0962087,667,09682,38100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces fradiaeStreptomyces fradiae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002154445.1Streptomyces fradiaesuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000220705.2Streptomyces xinghaiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type84.6214.7818.62
Best-match type96.2678.8484.69

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%
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