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Vigan1.1

Organism name:
Vigna angularis (adzuki bean)
Infraspecific name:
Cultivar: Jingnong 6
BioSample:
SAMN03074979
BioProject:
PRJNA261643
Submitter:
Beijing University of Agriculture
Date:
2015/07/31
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001190045.1 (latest)
RefSeq assembly accession:
GCF_001190045.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosomes Pltd and MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
JZJH01
Assembly method:
soapdenovo v. 2.04
Expected final version:
yes
Genome coverage:
167.67x
Sequencing technology:
Illumina HiSeq 2000

IDs: 432871 [UID] 2034928 [GenBank] 3341718 [RefSeq]

See Genome Information for Vigna angularis

There are 4 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length467,300,602
Total ungapped length450,316,005
Gaps between scaffolds352
Number of scaffolds37,727
Scaffold N501,292,063
Scaffold L5097
Number of contigs58,639
Contig N5038,390
Contig L503,459
Total number of chromosomes and plasmids13
Number of component sequences (WGS or clone)58,639

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_001190055.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM003371.1=NC_030637.10
Chromosome 2CM003372.1=NC_030638.10
Chromosome 3CM003373.1=NC_030639.10
Chromosome 4CM003374.1=NC_030640.10
Chromosome 5CM003375.1=NC_030641.10
Chromosome 6CM003376.1=NC_030642.10
Chromosome 7CM003377.1=NC_030643.10
Chromosome 8CM003378.1=NC_030644.10
Chromosome 9CM003379.1=NC_030645.10
Chromosome 10CM003380.1=NC_030646.10
Chromosome 11CM003381.1=NC_030647.10
unplacedn/an/an/a37,362

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All466,744,45337,725449,759,8561,292,06320,912352
Chromosome 142,234,8852741,072,1652,094,3241,87126
Chromosome 235,625,4063634,505,0491,653,9631,56535
Chromosome 341,204,9084139,755,8532,196,1851,87440
Chromosome 434,671,0042733,666,0832,028,7391,45626
Chromosome 530,687,1174529,517,5961,151,2731,50144
Chromosome 619,356,0031918,737,9871,545,03091118
Chromosome 739,404,5473638,120,5151,604,2301,65835
Chromosome 830,791,8153129,932,9451,486,4511,22130
Chromosome 931,747,2502530,828,6593,440,3751,40824
Chromosome 1040,424,4374739,027,0391,412,6681,73646
Chromosome 1126,588,8262925,674,8461,753,9311,15128
unplaced94,008,25537,36288,921,119346,8594,5600
MoleculeTotal
Length
All556,149
Chloroplast Pltd151,683
Mitochondrion MT404,466
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