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UNIGE_PanGut_3.0

Organism name:
Pantherophis guttatus (snakes)
Isolate:
EG266
Sex:
male
BioSample:
SAMN12106767
BioProject:
PRJNA268069
Submitter:
University of Geneva
Date:
2020/04/13
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001185365.2 (latest)
RefSeq assembly accession:
GCF_001185365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JTLQ02
Assembly method:
Supernova v. 2.0.1; BioNano Solve v. 3.2.1
Expected final version:
yes
Genome coverage:
75.0x
Sequencing technology:
Illumina HiSeq; BioNano genome maps

IDs: 6720881 [UID] 18662708 [GenBank] 19563418 [RefSeq]

See Genome Information for Pantherophis guttatus

History (Show revision history)

Comment

The version 01 of this genome assembly was originally obtained from a female subject and updated as a version 02 with a higher quality genome assembly obtained from a male subject

Global statistics

Total sequence length1,706,961,544
Total ungapped length1,626,744,210
Gaps between scaffolds0
Number of scaffolds34,268
Scaffold N5016,790,024
Scaffold L5024
Number of contigs119,215
Contig N5037,981
Contig L5011,281
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)34,268

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,706,961,54434,2681,626,744,21016,790,02484,9470
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