U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM105303v1

Organism name:
Haemophilus parainfluenzae (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 1209_HPAR
BioSample:
SAMN03197171
BioProject:
PRJNA267549
Submitter:
University of Washington
Date:
2015/07/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001053035.1 (latest)
RefSeq assembly accession:
GCF_001053035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JVYT01
Assembly method:
ABYSS v. 1.3.5
Genome coverage:
19x
Sequencing technology:
Illumina HiSeq

IDs: 363621 [UID] 1865428 [GenBank] 2015958 [RefSeq]

See Genome Information for Haemophilus parainfluenzae

There are 270 assemblies for this organism

See more

History (Show revision history)

Comment

Source DNA available from Steve Salipante, University of Washington Department of Laboratory Medicine, Box 357110, 1959 NE Pacific Street, NW120 Seattle, WA 98195-7110

Global statistics

Total sequence length1,975,962
Total ungapped length1,975,662
Gaps between scaffolds0
Number of scaffolds81
Scaffold N5082,007
Scaffold L509
Number of contigs84
Contig N5082,007
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)81

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,975,962811,975,66282,00730

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Haemophilus parainfluenzaeHaemophilus parainfluenzae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000191405.1Haemophilus parainfluenzae ATCC 33392suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000191405.1Haemophilus parainfluenzaesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type92.3684.9979.56
Best-match type92.3684.9979.56

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna