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ASM104317v1

Organism name:
Marinobacter psychrophilus (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 20041
BioSample:
SAMN03701403
BioProject:
PRJNA284323
Submitter:
Beijing Institute of Genomics, Chinese Academy of Sciences
Date:
2015/06/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001043175.1 (latest)
RefSeq assembly accession:
GCF_001043175.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.3
Genome coverage:
40x; 155x
Sequencing technology:
454; Illumina

IDs: 358041 [UID] 1849898 [GenBank] 1852748 [RefSeq]

See Genome Information for Marinobacter psychrophilus

There are 3 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Source DNA is avaiable from Yong Yu in Polar Research Institute of China,451 Jinqiao Road, Shanghai 300136, P.R. China, (yuyong@pric.gov.cn)

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/24/2023 03:39:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,659
CDSs (total)::3,597
Genes (coding)::3,524
CDSs (with protein)::3,524
Genes (RNA)::62
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::73
CDSs (without protein)::73
Pseudo Genes (ambiguous residues)::0 of 73
Pseudo Genes (frameshifted)::26 of 73
Pseudo Genes (incomplete)::46 of 73
Pseudo Genes (internal stop)::20 of 73
Pseudo Genes (multiple problems)::16 of 73
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,998,597
Total ungapped length3,998,597
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001043185.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP011494.1=NZ_CP011494.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,998,597

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Marinobacter psychrophilusMarinobacter psychrophilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000372805.1Marinobacter gelidimuriaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.7259.5065.55

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected