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ASM102108v1

Organism name:
Candidatus Liberibacter africanus PTSAPSY (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: PTSAPSY
BioSample:
SAMN03763724
BioProject:
PRJNA185151
Submitter:
USDA-ARS
Date:
2015/06/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001021085.1 (latest)
RefSeq assembly accession:
GCF_001021085.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Velvet v. 1.1.04
Reference guided assembly:
CP004005.1, AOFG00000000, NC_014774.1, NC_012985.1
Genome coverage:
60-80x
Sequencing technology:
Illumina Hiseq2000

IDs: 346721 [UID] 1799048 [GenBank] 1799558 [RefSeq]

See Genome Information for Candidatus Liberibacter africanus

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Some enriched target bacterial gDNA from insect vector may be available.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/25/2023 02:49:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,101
CDSs (total)::1,045
Genes (coding)::1,019
CDSs (with protein)::1,019
Genes (RNA)::56
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::44
ncRNAs::3
Pseudo Genes (total)::26
CDSs (without protein)::26
Pseudo Genes (ambiguous residues)::0 of 26
Pseudo Genes (frameshifted)::14 of 26
Pseudo Genes (incomplete)::11 of 26
Pseudo Genes (internal stop)::4 of 26
Pseudo Genes (multiple problems)::2 of 26
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,192,232
Total ungapped length1,192,232
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001021095.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP004021.1=NZ_CP004021.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,192,232

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Liberibacter africanus PTSAPSYCandidatus Liberibacter africanus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000590865.3Candidatus Liberibacter asiaticusreftype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.8537.9836.81

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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