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ASM101911v2

Organism name:
Staphylococcus sp. FDAARGOS_39 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_39
BioSample:
SAMN03255478
BioProject:
PRJNA231221
Submitter:
University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Date:
2018/01/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001019115.2 (latest)
RefSeq assembly accession:
GCF_001019115.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JYAQ02
Assembly method:
HGAP v. 2
Genome coverage:
1076x
Sequencing technology:
PacBio; Illumina

IDs: 1530111 [UID] 5908628 [GenBank] 5922918 [RefSeq]

See Genome Information for Staphylococcus sp. FDAARGOS_39

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/18/2018 18:17:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,566
CDS (total)::2,482
Genes (coding)::2,382
CDS (coding)::2,382
Genes (RNA)::84
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::61
ncRNAs::4
Pseudo Genes (total)::100
Pseudo Genes (ambiguous residues)::0 of 100
Pseudo Genes (frameshifted)::68 of 100
Pseudo Genes (incomplete)::21 of 100
Pseudo Genes (internal stop)::30 of 100
Pseudo Genes (multiple problems)::17 of 100
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,598,175
Total ungapped length2,598,175
Number of contigs6
Contig N501,593,980
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)6

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,598,17562,598,1751,593,98000
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