U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM101103v1

Organism name:
Streptomyces sp. CNQ-509 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CNQ-509
BioSample:
SAMN03699827
BioProject:
PRJNA284218
Submitter:
University of Tuebingen
Date:
2015/05/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001011035.1 (latest)
RefSeq assembly accession:
GCF_001011035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. v.2.8
Genome coverage:
87.7x
Sequencing technology:
454; Illumina

IDs: 341751 [UID] 1782088 [GenBank] 1782538 [RefSeq]

See Genome Information for Streptomyces sp. CNQ-509

History (Show revision history)

Comment

Bacteria available from Dr. Paul Jensen, Scripps institution of Oceanography, UC San Diego.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::07/18/2023 02:45:49
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,027
CDSs (total)::6,952
Genes (coding)::6,719
CDSs (with protein)::6,719
Genes (RNA)::75
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::57
ncRNAs::3
Pseudo Genes (total)::233
CDSs (without protein)::233
Pseudo Genes (ambiguous residues)::0 of 233
Pseudo Genes (frameshifted)::85 of 233
Pseudo Genes (incomplete)::200 of 233
Pseudo Genes (internal stop)::10 of 233
Pseudo Genes (multiple problems)::60 of 233
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,039,333
Total ungapped length8,039,333
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001011045.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP011492.1=NZ_CP011492.1

Assembly statistics

MoleculeTotal
Length
Chromosome 8,039,333

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. CNQ-509Streptomyces sp. CNQ-509

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013870535.1Streptomyces phytophilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.6558.8968.55

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna