U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM100508v2

Organism name:
Streptomyces humi (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MUSC 119
BioSample:
SAMN03465092
BioProject:
PRJNA280559
Submitter:
University of Malaya
Date:
2016/11/15
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001005085.2 (latest)
RefSeq assembly accession:
GCF_001005085.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LBMU02
Assembly method:
CLC NGS Cell v. June-2016
Expected final version:
yes
Genome coverage:
148.0x
Sequencing technology:
Illumina MiSeq

IDs: 890041 [UID] 3726908 [GenBank] 3731818 [RefSeq]

See Genome Information for Streptomyces humi

History (Show revision history)

Comment

Bacteria and source DNA available from Learn-Han Lee.

Global statistics

Total sequence length10,014,215
Total ungapped length10,014,215
Number of contigs214
Contig N50126,586
Contig L5026
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)214

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,014,21521410,014,215126,58600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces humiStreptomyces humi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013870495.1Streptomyces shenzhenensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.2355.6254.99

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
Support Center