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ASM96825v1

Organism name:
Streptomyces avermitilis MA-4680 = NBRC 14893 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MA-4680
BioSample:
SAMN03390037
BioProject:
PRJNA277389
Submitter:
National Institute of Advanced Industrial Science and Technology, AIST
Date:
2015/04/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000968255.1 (latest)
RefSeq assembly accession:
GCF_000968255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JZJK01
Assembly method:
AIST hybrid assembly pipeline v. 1.3; ABySS v. 1.3.4; GapCloser v. 1.12
Expected final version:
yes
Genome coverage:
1090x
Sequencing technology:
Illumina; SOLiD

IDs: 319861 [UID] 1719368 [GenBank] 1894668 [RefSeq]

See Genome Information for Streptomyces avermitilis

There are 8 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length10,468,295
Total ungapped length10,465,480
Gaps between scaffolds0
Number of scaffolds90
Scaffold N50486,485
Scaffold L507
Number of contigs101
Contig N50486,485
Contig L507
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)90

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000968295.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Plasmid SAP1n/an/an/a2
unplacedn/an/an/a88

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule10,468,2959010,465,480486,485110
Plasmid SAP1AllAssembled moleculeUnlocalized scaffolds94,171094,17120294,171094,17174,322074,322000000
unplacedAssembled molecule10,374,1248810,371,309486,485110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces avermitilis MA-4680 = NBRC 14893Streptomyces avermitilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001514135.1Streptomyces avermitilistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001514135.1Streptomyces avermitilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9785.0299.72
Best-match type99.9785.0299.72

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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