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ASM96430v1

  • Record removed. This version of the assembly has been suppressed.
Organism name:
Streptomyces sp. WMMB 714 (high G+C Gram-positive bacteria)
Infraspecific name:
Strain: WMMB 714
BioSample:
SAMN02745759
BioProject:
PRJNA187214
Submitter:
DOE Joint Genome Institute
Date:
2015/03/27
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000964305.1 (suppressed)
RefSeq assembly accession:
GCF_000964305.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LAND01
Assembly method:
Velvet v. 1.1.04; ALLPATHS v. R42328
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000; Illumina HiSeq 2500

IDs: 317521 [UID] 1711838 [GenBank] 1716278 [RefSeq]

See Genome Information for Streptomyces sp. WMMB 714

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1014370
Source DNA and Organism available from Cameron Currie (currie@bact.wisc.edu)
Source DNA available from Cameron Currie (currie@bact.wisc.edu)
Organism available from Cameron Currie (currie@bact.wisc.edu)
Contacts: Cameron Currie (currie@bact.wisc.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
assembly::Velvet v. 1.1.04; ALLPATHS v. R42328
investigation_type::bacteria_archaea
project_name::Streptomyces sp. WMMB 714
sequencing_meth::WGS
finishing_strategy::Level 1: Standard Draft
GOLD Stamp ID::Gp0022152
Funding Program::DOE-GLBRC 2009
Gene Calling Method::Prodigal 2.5
##MIGS-Data-END##

Global statistics

Total sequence length6,594,919
Total ungapped length6,594,894
Gaps between scaffolds0
Number of scaffolds34
Scaffold N50488,805
Scaffold L506
Number of contigs35
Contig N50488,805
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)35

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,594,919346,594,894488,80510
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