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ASM96351v1

  • Anomalous assembly.
Organism name:
Streptomyces albulus ZPM (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ZPM
BioSample:
SAMN03445854
BioProject:
PRJNA224122
Submitter:
department of life, USTC
Date:
2015/03/26
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_000963515.1 (latest)
RefSeq assembly accession:
GCF_000963515.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. 2010
Genome coverage:
200x
Sequencing technology:
Illumina

IDs: 317101 [UID] 1710248 [GenBank] 1712858 [RefSeq]

See Genome Information for Streptomyces albulus

There are 10 assemblies for this organism

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History (Show revision history)

Comment

Source DNA/bacteria available from Department of Life, USTC (wangl123@mail.ustc.edu.cn).
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/14/2013 11:10:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.2 (rev. 417454)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::8,458
CDS::8,191
Pseudo Genes::177
rRNAs::17 ( 5S, 16S, 23S )
tRNAs::72
ncRNA::1
Frameshifted Genes::128
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,784,577
Total ungapped length9,784,577
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000963525.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP006871.1=NZ_CP006871.1

Assembly statistics

MoleculeTotal
Length
Chromosome 9,784,577

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces albulus ZPMStreptomyces albulus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014650635.1Streptomyces albulussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650635.1Streptomyces albulussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type90.0561.0558.18
Best-match type90.0561.0558.18

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna
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