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ASM96188v1

Organism name:
Streptomyces rubellomurinus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 31215
BioSample:
SAMN03323311
BioProject:
PRJNA238534
Submitter:
University of Illinois
Date:
2015/03/24
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000961885.1 (latest)
RefSeq assembly accession:
GCF_000961885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JZKH01
Assembly method:
IDBA-UD v. 1.0.9
Expected final version:
yes
Genome coverage:
29.0x
Sequencing technology:
Illumina

IDs: 316261 [UID] 1705458 [GenBank] 1708768 [RefSeq]

See Genome Information for Streptomyces rubellomurinus

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/09/2015 14:07:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.9 (rev. 456657)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::7,682
CDS::6,268
Pseudo Genes::1,280
CRISPR Arrays::2
rRNAs::12 ( 5S, 16S, 23S )
tRNAs::73
ncRNA::49
Frameshifted Genes::63
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,610,816
Total ungapped length8,610,816
Number of contigs411
Contig N5074,283
Contig L5037
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)411

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,610,8164118,610,81674,28300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces rubellomurinusStreptomyces rubellomurinus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000716875.1Streptomyces novaecaesareaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.2353.1061.56

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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