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ASM95854v1

Organism name:
Streptomyces sp. FxanaA7 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FxanaA7
BioSample:
SAMN02745829
BioProject:
PRJNA182450
Submitter:
DOE Joint Genome Institute
Date:
2015/03/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000958545.1 (latest)
RefSeq assembly accession:
GCF_000958545.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LACL01
Assembly method:
Velvet v. 1.1.04; ALLPATHS v. R42328
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000; Illumina HiSeq 2500

IDs: 314631 [UID] 1697998 [GenBank] 1704548 [RefSeq]

See Genome Information for Streptomyces sp. FxanaA7

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1001135
Source DNA and Organism available from Cameron Currie (currie@bact.wisc.edu)
Source DNA available from Cameron Currie (currie@bact.wisc.edu)
Organism available from Cameron Currie (currie@bact.wisc.edu)
Contacts: Cameron Currie (currie@bact.wisc.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
assembly::Velvet v. 1.1.04; ALLPATHS v. R42328
investigation_type::bacteria_archaea
project_name::Streptomyces sp. FxanaA7
sequencing_meth::WGS
finishing_strategy::Level 1: Standard Draft
GOLD Stamp ID::Gp0014745
Funding Program::DOE-GLBRC 2011
Gene Calling Method::Prodigal 2.5
##MIGS-Data-END##

Global statistics

Total sequence length10,443,568
Total ungapped length10,437,728
Gaps between scaffolds0
Number of scaffolds115
Scaffold N50386,995
Scaffold L5010
Number of contigs138
Contig N50271,853
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)129

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,443,56811510,437,728386,995230

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. FxanaA7Streptomyces sp. FxanaA7

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014930365.1Streptomyces caniscabieitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.4594.3490.08

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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