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ASM93513v2

Organism name:
Streptomyces sp. MNU77 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MNU77
BioSample:
SAMN03200165
BioProject:
PRJNA267646
Submitter:
CSIR-IGIB, New Delhi
Date:
2017/01/05
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000935135.2 (latest)
RefSeq assembly accession:
GCF_000935135.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JXUQ02
Assembly method:
HGAP v. 2.0
Expected final version:
yes
Genome coverage:
131.0x
Sequencing technology:
PacBio

IDs: 944301 [UID] 3946228 [GenBank] 3952788 [RefSeq]

See Genome Information for Streptomyces sp. MNU77

History (Show revision history)

Comment

Bacteria and source DNA available from Rakesh Sharma, Energy and Environmental Biotechnology Lab, CSIR-IGIB, New Delhi, India.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/04/2017 17:11:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,669
CDS (total)::7,579
Genes (coding)::7,372
CDS (coding)::7,372
Genes (RNA)::90
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
partial rRNAs::
tRNAs::69
ncRNAs::3
Pseudo Genes (total)::207
Pseudo Genes (ambiguous residues)::0 of 207
Pseudo Genes (frameshifted)::89 of 207
Pseudo Genes (incomplete)::129 of 207
Pseudo Genes (internal stop)::23 of 207
Pseudo Genes (multiple problems)::29 of 207
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,868,350
Total ungapped length8,868,350
Number of contigs4
Contig N508,219,841
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)4

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,868,35048,868,3508,219,84100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. MNU77Streptomyces sp. MNU77

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650675.1Streptomyces anulatustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.2682.5382.64

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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