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Source database (GenBank or RefSeq) File type

ASM93222v2

Organism name:: Streptomyces griseus (high G+C Gram-positive bacteria)
Taxonomy check:: Inconclusive
Infraspecific name:: Strain: S4-7
BioSample:: SAMN03320103
BioProject:: PRJNA237995
Submitter:: Gyongsang National University
Date:: 2018/02/12
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
GenBank assembly accession:: GCA_000932225.2 (latest)
RefSeq assembly accession:: GCF_000932225.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JYBE02
Assembly method:: HGAP v. 2.0
Expected final version:: yes
Genome coverage:: 83.48x
Sequencing technology:: PacBio

IDs: 1560081 [UID] 6017068 [GenBank] 6021988 [RefSeq]

See Genome Information for Streptomyces griseus

Pathogen Detection Resources

There are 35 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000932225.2	=	GCF_000932225.2	ASM93222v2	Contig	Latest GenBank, Latest RefSeq
GCA_000932225.1	=	GCF_000932225.1	ASM93222v1	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from bacteria.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::12/13/2016 13:13:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,898
CDS (total)::6,810
Genes (coding)::6,562
CDS (coding)::6,562
Genes (RNA)::88
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::67
ncRNAs::3
Pseudo Genes (total)::248
Pseudo Genes (ambiguous residues)::0 of 248
Pseudo Genes (frameshifted)::116 of 248
Pseudo Genes (incomplete)::161 of 248
Pseudo Genes (internal stop)::20 of 248
Pseudo Genes (multiple problems)::44 of 248
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	7,691,616
Total ungapped length	7,691,616
Number of contigs	3
Contig N50	7,499,644
Contig L50	1
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	3

	ANI	Query coverage	Subject coverage
Declared type	91.43	75.30	67.91
Best-match type	99.44	85.06	90.43

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ASM93222v2

See Genome Information for Streptomyces griseus

Pathogen Detection Resources

There are 35 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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