U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ViralProj14158

Organism name:
Human gammaherpesvirus 8 (viruses)
Infraspecific name:
Strain: GK18
BioProject:
PRJNA485481
Submitter:
na
Date:
2007/04/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
ICTV species exemplar
GenBank assembly accession:
GCA_000838265.1 (latest)
RefSeq assembly accession:
GCF_000838265.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 4687428 [UID] 4687428 [GenBank] 1532888 [RefSeq]

See Genome Information for Rhadinovirus humangamma8

There are 37 assemblies for this organism

See more

History (Show revision history)

Comment

Construction: The HHV-8 genome present in virions consists of a unique region (U) flanked at each end by variable numbers of a direct repeat (TR). The number of copies of TR totals 35-45, giving a genome size of approximately ... 170 kbp. The sequence is depicted as U followed by a single copy of TR. In virion DNA, each genome end is thought to terminate with a partial copy of TR such that circularization would create a complete copy of TR. Transcription: PolyA signals are known for some genes and predicted for many from the locations of AATAAA or ATTAAA motifs. Nomenclature: With a few exceptions, the primary nomenclature is that assigned originally to HHV-8 genes. The names of HHV-1 counterparts (UL1-UL54) are indicated for core genes inherited from the ancestor of the Alpha-, Beta- and Gammaherpesvirinae; functional information on these genes may be derived from HHV-1. The names of HHV-5 counterparts are indicated for genes inherited from the ancestor of Beta- and Gammaherpesvirinae that lack counterparts in the Alphaherpesvirinae.  more

Global statistics

Total sequence length137,969
Total ungapped length137,969
Total number of viral segments1

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000838255.1)
Molecule nameGenBank sequenceRefSeq sequence
Segment AF148805.2=NC_009333.1

Assembly statistics

MoleculeTotal
Length
Segment 137,969