Format

Download Assemblies

Send to:

Choose Destination

Aradu1.1

Organism name:
Arachis duranensis (eudicots)
Infraspecific name:
Cultivar: V14167
BioSample:
SAMN02982871
BioProject:
PRJNA258023
Submitter:
Iowa State University
Date:
2017/04/25
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000817695.2 (latest)
RefSeq assembly accession:
GCF_000817695.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JQIN01
Assembly method:
SOAPdenovo v. 2.04
Expected final version:
no
Genome coverage:
100.0x
Sequencing technology:
Illumina

IDs: 1080891 [UID] 4412058 [GenBank] 4429468 [RefSeq]

See Genome Information for Arachis duranensis

There are 2 assemblies for this organism

See more

History (Show revision history)

Global statistics

Total sequence length1,084,261,490
Total assembly gap length144,229,261
Gaps between scaffolds1,682
Number of scaffolds3,189
Scaffold N501,068,268
Scaffold L50270
Number of contigs130,694
Contig N5024,692
Contig L5010,961
Total number of chromosomes and plasmids10
Number of component sequences (WGS or clone)3,189

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000817705.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome A01CM003088.2=NC_029772.20
Chromosome A02CM003089.2=NC_029773.20
Chromosome A03CM003090.2=NC_029774.20
Chromosome A04CM003091.2=NC_029775.20
Chromosome A05CM003092.2=NC_029776.20
Chromosome A06CM003093.2=NC_029777.20
Chromosome A07CM003094.2=NC_029778.20
Chromosome A08CM003095.2=NC_029779.20
Chromosome A09CM003096.2=NC_029780.20
Chromosome A10CM003097.2=NC_029781.20
unplacedn/an/an/a1,497

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,084,261,4903,189940,032,2291,068,268127,5051,682
Chromosome A01107,035,53710497,407,0312,290,86810,969103
Chromosome A0293,869,04820179,868,437899,62511,616200
Chromosome A03135,057,546195118,740,5591,198,99715,304194
Chromosome A04123,556,382241105,980,893742,72715,279240
Chromosome A05110,037,03717895,992,0341,228,89812,719177
Chromosome A06112,752,71720597,422,533976,85513,439204
Chromosome A0779,126,72412069,172,2881,390,3199,195119
Chromosome A0849,462,2345445,823,2671,719,8234,09653
Chromosome A09120,672,674170107,178,4601,155,80813,456169
Chromosome A10109,463,23622493,307,501952,59214,035223
unplaced43,228,3551,49729,139,22641,2917,3970
Support Center