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ASM80634v1

  • Anomalous assembly.
Organism name:
Zeugodacus cucurbitae (melon fly)
Infraspecific name:
Strain: USDA-PBARC White Pupae T1
Sex:
male
BioSample:
SAMN03083541
BioProject:
PRJNA259565
Submitter:
USDA ARS
Date:
2014/12/23
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_000806345.1 (replaced)
RefSeq assembly accession:
GCF_000806345.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
JRNW01
Assembly method:
AllPaths v. 49856
Expected final version:
no
Genome coverage:
66.2x
Sequencing technology:
Illumina HiSeq

IDs: 237221 [UID] 1428458 [GenBank] 1506428 [RefSeq]

See Genome Information for Zeugodacus cucurbitae

History (Show revision history)

Comment

A short insert library was constructed from a single melon fly (USDA ID 2M2-2). A 3 kb mate-paired library was constructed from a single melon fly that is a full sibling of the first melon fly (USDA ID 2M1-4). ... An 8 kb mate-paired library was constructed from a pool of individuals from the T1 colony (T1 pool). Sequencing and DNA extractions were done separately for each library then the reads from the three libraries were pooled to generate the assembly.
In July 2022 46 sequences were suppressed because they were found to be contaminants.  more

Global statistics

Total sequence length374,820,345
Total ungapped length316,281,465
Gaps between scaffolds0
Number of scaffolds5,572
Scaffold N501,399,015
Scaffold L5066
Number of contigs43,002
Contig N5017,360
Contig L504,488
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)43,002

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced374,804,5205,571316,265,6401,399,01537,4300
MoleculeTotal
Length
Mitochondrion MT15,825
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