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ASM78383v2

Organism name:
Enterobacter hormaechei (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_69
BioSample:
SAMN02934520
BioProject:
PRJNA231221
Submitter:
University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Date:
2018/01/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000783835.2 (latest)
RefSeq assembly accession:
GCF_000783835.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JTBN02
Assembly method:
Celera v. 8.1
Genome coverage:
419x
Sequencing technology:
PacBio; Illumina

IDs: 1529881 [UID] 5908158 [GenBank] 5923098 [RefSeq]

See Genome Information for Enterobacter hormaechei

There are 1992 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The organism was changed from "Enterobacter cloacae" to "Enterobacter hormaechei" in January 2019.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/17/2018 18:56:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,041
CDS (total)::4,926
Genes (coding)::4,741
CDS (coding)::4,741
Genes (RNA)::115
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::84
ncRNAs::6
Pseudo Genes (total)::185
Pseudo Genes (ambiguous residues)::0 of 185
Pseudo Genes (frameshifted)::101 of 185
Pseudo Genes (incomplete)::82 of 185
Pseudo Genes (internal stop)::41 of 185
Pseudo Genes (multiple problems)::36 of 185
##Genome-Annotation-Data-END##

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_000783835.2
Current Name::Enterobacter hormaechei
Previous Name::Enterobacter cloacae
Date Updated::2019-01-07
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_001729725.1
A1 Name::Enterobacter hormaechei
A1 ANI::99.03965%
A1 Query Coverage::85.52%
A1 Subject Coverage::90.24%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_000025565.1
A2 Name::Enterobacter cloacae
A2 ANI::88.03657%
A2 Query Coverage::80.15%
A2 Subject Coverage::72.24%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length5,046,331
Total ungapped length5,046,331
Number of contigs4
Contig N504,726,653
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,046,33145,046,3314,726,65300
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