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Source database (GenBank or RefSeq) File type

ASM78383v2

Organism name:: Enterobacter hormaechei (CDC Enteric Group 75)
Taxonomy check:: OK
Infraspecific name:: Strain: FDAARGOS_69
BioSample:: SAMN02934520
BioProject:: PRJNA231221
Submitter:: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Date:: 2018/01/19
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
GenBank assembly accession:: GCA_000783835.2 (latest)
RefSeq assembly accession:: GCF_000783835.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JTBN02
Assembly method:: Celera v. 8.1
Genome coverage:: 419x
Sequencing technology:: PacBio; Illumina

IDs: 1529881 [UID] 5908158 [GenBank] 5923098 [RefSeq]

See Genome Information for Enterobacter hormaechei

Pathogen Detection Resources

There are 5220 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000783835.2	=	GCF_000783835.2	ASM78383v2	Contig	Latest GenBank, Latest RefSeq
GCA_000783835.1	=	GCF_000783835.1	ASM78383v1	Contig	Replaced GenBank, Replaced RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The organism was changed from "Enterobacter cloacae" to "Enterobacter hormaechei" in January 2019.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::01/17/2018 18:56:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,041
CDS (total)::4,926
Genes (coding)::4,741
CDS (coding)::4,741
Genes (RNA)::115
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::84
ncRNAs::6
Pseudo Genes (total)::185
Pseudo Genes (ambiguous residues)::0 of 185
Pseudo Genes (frameshifted)::101 of 185
Pseudo Genes (incomplete)::82 of 185
Pseudo Genes (internal stop)::41 of 185
Pseudo Genes (multiple problems)::36 of 185
##Genome-Annotation-Data-END##

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##This Genome (query)::GCA_000783835.2
Current Name::Enterobacter hormaechei
Previous Name::Enterobacter cloacae
Date Updated::2019-01-07
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_001729725.1
A1 Name::Enterobacter hormaechei
A1 ANI::99.03965%
A1 Query Coverage::85.52%
A1 Subject Coverage::90.24%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_000025565.1
A2 Name::Enterobacter cloacae
A2 ANI::88.03657%
A2 Query Coverage::80.15%
A2 Subject Coverage::72.24%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length	5,046,331
Total ungapped length	5,046,331
Number of contigs	4
Contig N50	4,726,653
Contig L50	1
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	4

	ANI	Query coverage	Subject coverage
Declared type	99.04	85.52	90.24
Best-match type	99.04	85.52	90.24

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ASM78383v2

See Genome Information for Enterobacter hormaechei

Pathogen Detection Resources

There are 5220 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Taxonomic-Update-Statistics

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