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ASM77289v1

Organism name:
Streptomyces galbus (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: KCCM 41354
BioSample:
SAMN03031363
BioProject:
PRJNA259693
Submitter:
GreenGene Biotech Inc.
Date:
2014/11/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • genome length too large
GenBank assembly accession:
GCA_000772895.1 (latest)
RefSeq assembly accession:
GCF_000772895.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JRHJ01
Assembly method:
GS De Novo Assembler v. Jan-2011
Expected final version:
no
Reference guided assembly:
FN554889.1
Genome coverage:
30.0x
Sequencing technology:
Roche 454 FLX

IDs: 220081 [UID] 1371268 [GenBank] 1374558 [RefSeq]

See Genome Information for Streptomyces galbus

There are 4 assemblies for this organism

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History (Show revision history)

Comment

The contigs were compared to the genome of Streptomyces_scabiei (GenBank Accession FN554889.1) with lastz (http://www.bx.psu.edu/miller_lab/) after repeats were masked with RepeatMask (http://www.repeatmasker.org/) to determine their direction and order. The direction and order were graphically confirmed with GSV (http://cas-bioinfo.cas.unt.edu/gsv)

Global statistics

Total sequence length10,053,065
Total ungapped length10,053,065
Number of contigs104
Contig N50241,582
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)104

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,053,06510410,053,065241,58200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces galbusStreptomyces galbus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_005280195.1Streptomyces galbustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022385335.1Streptomyces deccanensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type85.2126.9534.58
Best-match type92.9374.5574.20

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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