U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM76965v1

Organism name:
Thermococcus eurythermalis (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: CGMCC:7834; JCM:30233
Infraspecific name:
Strain: A501
BioSample:
SAMN02838508
BioProject:
PRJNA251677
Submitter:
Laboratory of Marine Oceanography
Date:
2014/10/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000769655.1 (latest)
RefSeq assembly accession:
GCF_000769655.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. 1.05
Genome coverage:
1100x
Sequencing technology:
Illumina

IDs: 218451 [UID] 1365698 [GenBank] 2036478 [RefSeq]

See Genome Information for Thermococcus eurythermalis

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/03/2023 01:14:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,334
CDSs (total)::2,282
Genes (coding)::2,250
CDSs (with protein)::2,250
Genes (RNA)::52
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::2
Pseudo Genes (total)::32
CDSs (without protein)::32
Pseudo Genes (ambiguous residues)::0 of 32
Pseudo Genes (frameshifted)::17 of 32
Pseudo Genes (incomplete)::15 of 32
Pseudo Genes (internal stop)::8 of 32
Pseudo Genes (multiple problems)::5 of 32
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,126,164
Total ungapped length2,126,164
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000769665.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP008887.1=NZ_CP008887.1
Plasmid unnamedCP008888.1=NZ_CP008888.1

Assembly statistics

MoleculeTotal
Length
All2,126,164
Chromosome 2,122,535
Plasmid unnamed3,629

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermococcus eurythermalisThermococcus eurythermalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000816105.1Thermococcus guaymasensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.1545.5750.44

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected