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ASM74571v1

  • Record removed. This version of the assembly has been suppressed.
Organism name:
Streptomyces mirabilis (high G+C Gram-positive bacteria)
Infraspecific name:
Strain: OV308
BioSample:
SAMN02787133
BioProject:
PRJNA247519
Submitter:
DOE Joint Genome Institute
Date:
2014/08/28
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000745715.1 (suppressed)
RefSeq assembly accession:
GCF_000745715.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JQJV01
Assembly method:
Unknown program v. before Fri Aug 15 11:22:51 PDT 2014
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000; Illumina HiSeq 2500

IDs: 206421 [UID] 1194048 [GenBank] 1447668 [RefSeq]

See Genome Information for Streptomyces mirabilis

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1035645
Source DNA and Organism available from Dale Pelletier (pelletierda@ornl.gov)
Source DNA available from Dale Pelletier (pelletierda@ornl.gov)
Organism available from Dale Pelletier (pelletierda@ornl.gov)
Contacts: Dale Pelletier (pelletierda@ornl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Streptomyces mirabilis OV308
sequencing_meth::WGS
finishing_strategy::Level 1: Standard Draft
GOLD Stamp ID::Gi0071081
Gene Calling Method::Prodigal 2.5
Isolation Site::Populus root endosphere
##MIGS-Data-END##

Global statistics

Total sequence length10,042,643
Total ungapped length10,037,758
Gaps between scaffolds0
Number of scaffolds81
Scaffold N50298,821
Scaffold L5012
Number of contigs113
Contig N50178,642
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)106

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,042,6438110,037,758298,821320
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