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ASM73871v1

Organism name:
Streptomyces scabiei (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NCPPB 4066
BioSample:
SAMN02927996
BioProject:
PRJNA255690
Submitter:
University of Exeter
Date:
2014/08/08
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000738715.1 (latest)
RefSeq assembly accession:
GCF_000738715.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JPPW01
Assembly method:
Velvet v. 1.2.10
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 202871 [UID] 1186668 [GenBank] 1447688 [RefSeq]

See Genome Information for Streptomyces scabiei

There are 16 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/28/2014 15:49:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.6 (rev. 440435)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::8,311
CDS::8,136
Pseudo Genes::78
rRNAs::6 ( 5S, 16S, 23S )
tRNAs::75
ncRNA::16
Frameshifted Genes::67
##Genome-Annotation-Data-END##

Global statistics

Total sequence length10,010,251
Total ungapped length9,999,314
Gaps between scaffolds0
Number of scaffolds74
Scaffold N50373,069
Scaffold L507
Number of contigs440
Contig N5040,109
Contig L5081
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)440

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,010,251749,999,314373,0693660

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces scabieiStreptomyces scabiei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014873495.1Streptomyces stelliscabieitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.3775.6972.12

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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