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Doro.v1.0

Organism name:
Streptomyces xanthophaeus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NRRL B-5414
BioSample:
SAMN02645271
BioProject:
PRJNA238534
Submitter:
University of Illinois
Date:
2014/07/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000725805.1 (latest)
RefSeq assembly accession:
GCF_000725805.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JOFT01
Assembly method:
IDBA UD v. 1.0.9
Genome coverage:
175x
Sequencing technology:
Illumina

IDs: 196171 [UID] 1169798 [GenBank] 1174138 [RefSeq]

See Genome Information for Streptomyces xanthophaeus

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Bacteria available from NRRL

Global statistics

Total sequence length8,621,934
Total ungapped length8,621,244
Gaps between scaffolds0
Number of scaffolds163
Scaffold N50253,485
Scaffold L5011
Number of contigs174
Contig N50240,124
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)174

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,621,9341638,621,244253,485110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces xanthophaeusStreptomyces xanthophaeus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016755895.1Streptomyces xanthophaeustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016755895.1Streptomyces xanthophaeustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9898.6198.24
Best-match type99.9898.6198.24

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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