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ASM72080v1

Organism name:
Streptomyces violaceoruber (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NRRL S-981
BioSample:
SAMN02645441
BioProject:
PRJNA238534
Submitter:
University of Illinois
Date:
2014/07/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • genome length too large
GenBank assembly accession:
GCA_000720805.1 (latest)
RefSeq assembly accession:
GCF_000720805.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JODI01
Assembly method:
IDBA UD v. 1.0.9
Genome coverage:
124x
Sequencing technology:
Illumina

IDs: 193541 [UID] 1159898 [GenBank] 1168278 [RefSeq]

See Genome Information for Streptomyces violaceoruber

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from NRRL

Global statistics

Total sequence length10,530,441
Total ungapped length10,530,441
Number of contigs351
Contig N50101,303
Contig L5032
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)351

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,530,44135110,530,441101,30300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces violaceoruberStreptomyces violaceoruber

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000716215.1Streptomyces resistomycificustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.1245.7252.91

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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