U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM71981v1

Organism name:
Streptomyces sp. NRRL F-5065 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NRRL F-5065
BioSample:
SAMN02645490
BioProject:
PRJNA238534
Submitter:
University of Illinois
Date:
2014/07/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000719815.1 (latest)
RefSeq assembly accession:
GCF_000719815.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JOHV01
Assembly method:
IDBA UD v. 1.0.9
Genome coverage:
270x
Sequencing technology:
Illumina

IDs: 193051 [UID] 1158918 [GenBank] 1165928 [RefSeq]

See Genome Information for Streptomyces sp. NRRL F-5065

Pathogen Detection Resources

History (Show revision history)

Comment

Bacteria available from NRRL

Global statistics

Total sequence length7,062,954
Total ungapped length7,062,954
Number of contigs229
Contig N50120,967
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)229

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced7,062,9542297,062,954120,96700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. NRRL F-5065Streptomyces sp. NRRL F-5065

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014648815.1Streptomyces flaveolustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.0752.4347.05

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
You are here: NCBI > Genomes & Maps > Assembly
Support Center