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ASM71943v1

Organism name:
Streptomyces albidoflavus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NRRL F-5618
BioSample:
SAMN02645456
BioProject:
PRJNA238534
Submitter:
University of Illinois
Date:
2014/07/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000719435.1 (latest)
RefSeq assembly accession:
GCF_000719435.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JOGN01
Assembly method:
IDBA UD v. 1.0.9
Genome coverage:
342x
Sequencing technology:
Illumina

IDs: 192861 [UID] 1158538 [GenBank] 1167558 [RefSeq]

See Genome Information for Streptomyces albidoflavus

There are 57 assemblies for this organism

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History (Show revision history)

Comment

Bacteria available from NRRL
The organism was changed from "Streptomyces griseus subsp. griseus" to "Streptomyces albidoflavus" in July 2019.

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_000719435.1
Current Name::Streptomyces albidoflavus
Previous Name::Streptomyces griseus subsp. griseus
Date Updated::2019-07-17
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_000719955.1
A1 Name::Streptomyces albidoflavus
A1 ANI::98.97%
A1 Query Coverage::94.21%
A1 Subject Coverage::94.45%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_900460065.1
A2 Name::Streptomyces griseus subsp. griseus
A2 ANI::83.99%
A2 Query Coverage::25.77%
A2 Subject Coverage::21.46%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length7,102,828
Total ungapped length7,102,828
Number of contigs165
Contig N50117,486
Contig L5022
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)165

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,102,8281657,102,828117,48600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces albidoflavusStreptomyces albidoflavus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004195735.1Streptomyces albidoflavustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004195735.1Streptomyces albidoflavustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9792.5894.36
Best-match type98.9792.5894.36

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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