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ASM71919v1

Organism name:
Streptomyces californicus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NRRL B-2895
BioSample:
SAMN02645252
BioProject:
PRJNA238534
Submitter:
University of Illinois
Date:
2014/07/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from synonym type material
GenBank assembly accession:
GCA_000719195.1 (latest)
RefSeq assembly accession:
GCF_000719195.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JOFA01
Assembly method:
IDBA UD v. 1.0.9
Genome coverage:
218x
Sequencing technology:
Illumina

IDs: 192751 [UID] 1158318 [GenBank] 1168578 [RefSeq]

See Genome Information for Streptomyces californicus

There are 14 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from NRRL

Global statistics

Total sequence length8,175,879
Total ungapped length8,175,879
Number of contigs82
Contig N50303,798
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)82

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,175,879828,175,879303,79800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces californicusStreptomyces californicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016906265.1Streptomyces californicussyntype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016906265.1Streptomyces californicussyntype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9499.38
Best-match type99.9999.9499.38

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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