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ASM71862v1

Organism name:
Streptomyces lavenduligriseus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NRRL ISP-5487
BioSample:
SAMN02645384
BioProject:
PRJNA238534
Submitter:
University of Illinois
Date:
2014/07/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000718625.1 (latest)
RefSeq assembly accession:
GCF_000718625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JOBD01
Assembly method:
IDBA UD v. 1.0.9
Genome coverage:
172x
Sequencing technology:
Illumina

IDs: 192461 [UID] 1157738 [GenBank] 1167638 [RefSeq]

See Genome Information for Streptomyces lavenduligriseus

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from NRRL

Global statistics

Total sequence length8,716,851
Total ungapped length8,716,851
Number of contigs217
Contig N50193,158
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)217

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,716,8512178,716,851193,15800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces lavenduligriseusStreptomyces lavenduligriseus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014649115.1Streptomyces eurythermustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.9982.5578.49

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected
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