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ASM71815v1

Organism name:
Streptomyces lavendulae subsp. lavendulae (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NRRL B-2774
BioSample:
SAMN02645248
BioProject:
PRJNA238534
Submitter:
University of Illinois
Date:
2014/07/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000718155.1 (latest)
RefSeq assembly accession:
GCF_000718155.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JOEW01
Assembly method:
IDBA UD v. 1.0.9
Genome coverage:
174x
Sequencing technology:
Illumina

IDs: 192221 [UID] 1157268 [GenBank] 1165228 [RefSeq]

See Genome Information for Streptomyces lavendulae

There are 12 assemblies for this organism

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History (Show revision history)

Comment

Bacteria available from NRRL

Global statistics

Total sequence length8,466,185
Total ungapped length8,466,185
Number of contigs357
Contig N50164,157
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)357

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,466,1853578,466,185164,15700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces lavendulae subsp. lavendulaeStreptomyces lavendulae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000966975.1Streptomyces katraetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.5654.5057.32

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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