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ASM71773v1

  • Anomalous assembly.
Organism name:
Streptomyces griseoluteus (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NRRL ISP-5360
BioSample:
SAMN02645385
BioProject:
PRJNA238534
Submitter:
University of Illinois
Date:
2014/07/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_000717735.1 (latest)
RefSeq assembly accession:
GCF_000717735.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JOBE01
Assembly method:
IDBA UD v. 1.0.9
Genome coverage:
158x
Sequencing technology:
Illumina

IDs: 192011 [UID] 1156848 [GenBank] 1165168 [RefSeq]

See Genome Information for Streptomyces griseoluteus

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from NRRL

Global statistics

Total sequence length8,103,281
Total ungapped length8,103,281
Number of contigs190
Contig N50111,996
Contig L5023
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)190

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,103,2811908,103,281111,99600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces griseoluteusStreptomyces griseoluteus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014656035.1Streptomyces griseoluteustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000725545.1Streptomyces exfoliatustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type83.8618.9723.06
Best-match type96.2882.0284.40

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchbest matching type is part of Streptomyces; we treat this group as inconclusive
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