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ASM71772v1

Organism name:
Streptomyces pyridomyceticus (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NRRL ISP-5024
BioSample:
SAMN02645379
BioProject:
PRJNA238534
Submitter:
University of Illinois
Date:
2014/07/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000717725.1 (latest)
RefSeq assembly accession:
GCF_000717725.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JOAY01
Assembly method:
IDBA UD v. 1.0.9
Genome coverage:
306x
Sequencing technology:
Illumina

IDs: 191991 [UID] 1156808 [GenBank] 1165308 [RefSeq]

See Genome Information for Streptomyces pyridomyceticus

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from NRRL

Global statistics

Total sequence length6,312,990
Total ungapped length6,312,990
Number of contigs139
Contig N50107,132
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)139

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,312,9901396,312,990107,13200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces pyridomyceticusStreptomyces pyridomyceticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000716875.1Streptomyces novaecaesareaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.9999.8184.83

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly
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