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ASM71706v1

  • Anomalous assembly.
Organism name:
Streptomyces fulvoviridis (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NRRL ISP-5210
BioSample:
SAMN02645282
BioProject:
PRJNA238534
Submitter:
University of Illinois
Date:
2014/07/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_000717065.1 (latest)
RefSeq assembly accession:
GCF_000717065.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JNXH01
Assembly method:
IDBA UD v. 1.0.9
Genome coverage:
266x
Sequencing technology:
Illumina

IDs: 191681 [UID] 1156168 [GenBank] 1369048 [RefSeq]

History (Show revision history)

Comment

Bacteria available from NRRL

Global statistics

Total sequence length7,398,515
Total ungapped length7,398,515
Number of contigs67
Contig N50518,276
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)67

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,398,515677,398,515518,27600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces fulvoviridisStreptomyces fulvoviridis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000717245.1[Kitasatospora] papulosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.3494.9392.80

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly
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