U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

ASM71681v1

  • Anomalous assembly.
Organism name:
Streptomyces olivaceus (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NRRL B-1125
BioSample:
SAMN02645191
BioProject:
PRJNA238534
Submitter:
University of Illinois
Date:
2014/07/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_000716815.1 (latest)
RefSeq assembly accession:
GCF_000716815.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JNWM01
Assembly method:
IDBA UD v. 1.0.9
Genome coverage:
272x
Sequencing technology:
Illumina

IDs: 191561 [UID] 1155918 [GenBank] 1369028 [RefSeq]

See Genome Information for Streptomyces olivaceus

There are 43 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from NRRL

Global statistics

Total sequence length7,397,654
Total ungapped length7,397,654
Number of contigs65
Contig N50518,301
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)65

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,397,654657,397,654518,30100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces olivaceusStreptomyces olivaceus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000721235.1Streptomyces olivaceustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000717245.1[Kitasatospora] papulosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type83.5822.5019.39
Best-match type99.3594.9592.80

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchbest matching type is part of Streptomyces; we treat this group as inconclusive
Support Center