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rev-51

Organism name:
Streptomyces rimosus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: R6-500MV9-R8
BioSample:
SAMN02730068
BioProject:
PRJNA242833
Submitter:
TU Kaiserslautern
Date:
2014/06/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000707965.1 (latest)
RefSeq assembly accession:
GCF_000707965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JMGY01
Assembly method:
Velvet v. 1.2.09
Expected final version:
no
Genome coverage:
181.0x
Sequencing technology:
Illumina MiSeq

IDs: 187141 [UID] 1131618 [GenBank] 1576038 [RefSeq]

See Genome Information for Streptomyces rimosus

There are 55 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::06/04/2014 11:33:25
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Annotation Software revision::2.5 (rev. 436558)
Genes::6,618
CDS::6,274
Pseudo Genes::253
rRNAs::12 ( 5S, 16S, 23S )
tRNAs::66
ncRNA::13
Frameshifted Genes::227
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,386,169
Total ungapped length8,385,015
Gaps between scaffolds0
Number of scaffolds375
Scaffold N50419,227
Scaffold L508
Number of contigs472
Contig N5094,478
Contig L5028
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)375

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,386,1693758,385,015419,227970

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces rimosusStreptomyces rimosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000331185.2Streptomyces rimosus subsp. rimosus ATCC 10970type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000331185.2Streptomyces rimosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9299.6686.66
Best-match type99.9299.6686.66

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna