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mv9-51

Organism name:
Streptomyces rimosus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: R6-500MV9
BioSample:
SAMN02730067
BioProject:
PRJNA242829
Submitter:
TU Kaiserslautern
Date:
2014/06/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000707945.1 (latest)
RefSeq assembly accession:
GCF_000707945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JMGX01
Assembly method:
Velvet v. 1.2.09
Expected final version:
no
Genome coverage:
98.0x
Sequencing technology:
Illumina MiSeq

IDs: 187131 [UID] 1131598 [GenBank] 1360048 [RefSeq]

See Genome Information for Streptomyces rimosus

There are 41 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::04/28/2014 12:42:59
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Annotation Software revision::2.5 (rev. 433059)
Genes::7,018
CDS::6,829
Pseudo Genes::99
rRNAs::11 ( 5S, 16S, 23S )
tRNAs::64
ncRNA::15
Frameshifted Genes::76
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,197,540
Total ungapped length8,195,802
Gaps between scaffolds0
Number of scaffolds88
Scaffold N50178,695
Scaffold L5012
Number of contigs193
Contig N5080,828
Contig L5031
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)88

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,197,540888,195,802178,6951050

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces rimosusStreptomyces rimosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000717285.1Streptomyces rimosus subsp. rimosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000717285.1Streptomyces rimosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9799.8485.33
Best-match type99.9799.8485.33

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna
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