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ASM70236v1

Organism name:
Streptomyces sp. CNS654 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CNS654
BioSample:
SAMN02841233
BioProject:
PRJNA239507
Submitter:
DOE Joint Genome Institute
Date:
2014/06/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000702365.1 (latest)
RefSeq assembly accession:
GCF_000702365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JNLT01
Assembly method:
Unknown program v. before 2014-03-14
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 184351 [UID] 1109378 [GenBank] 1356428 [RefSeq]

See Genome Information for Streptomyces sp. CNS654

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1007231
Source DNA and Organism available from paul robert jensen (pjensen@ucsd.edu)
Source DNA available from paul robert jensen (pjensen@ucsd.edu)
Organism available from paul robert jensen (pjensen@ucsd.edu)
Contacts: paul robert jensen (pjensen@ucsd.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft ... assembly at JGI-PGF
Annotation by JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Streptomyces sp. CNS654
sequencing_meth::WGS
GOLD Stamp ID::Gi14639
Funding Program::DOE-CSP 2012
Gene Calling Method::Prodigal 2.5
Gram Staining::Gram+
##MIGS-Data-END##

Global statistics

Total sequence length8,340,747
Total ungapped length8,339,147
Gaps between scaffolds0
Number of scaffolds84
Scaffold N50345,006
Scaffold L508
Number of contigs87
Contig N50297,355
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)86

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,340,747848,339,147345,00630

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. CNS654Streptomyces sp. CNS654

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008632535.1Streptomyces parvustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.8979.9883.52

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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