U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

ASM70132v1

  • Record removed. This version of the assembly has been suppressed.
Organism name:
Streptomyces sp. URHA0041 (high G+C Gram-positive bacteria)
Infraspecific name:
Strain: URHA0041
BioSample:
SAMN02841147
BioProject:
PRJNA213783
Submitter:
DOE Joint Genome Institute
Date:
2014/06/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000701325.1 (suppressed)
RefSeq assembly accession:
GCF_000701325.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JNIH01
Assembly method:
Unknown program v. before 2014-03-13
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 183831 [UID] 1108178 [GenBank] 1366338 [RefSeq]

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1015643
Source DNA and Organism available from Eoin Brodie (ELBrodie@lbl.gov)
Source DNA available from Eoin Brodie (ELBrodie@lbl.gov)
Organism available from Eoin Brodie (ELBrodie@lbl.gov)
Contacts: Eoin Brodie (ELBrodie@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
environment::Soil
investigation_type::bacteria_archaea
project_name::Streptomyces sp. URHA0041
sequencing_meth::WGS
GOLD Stamp ID::Gi22177
Funding Program::DOE-CSP 2012
Gene Calling Method::Prodigal 2.5
Isolation Site::Mediterranean Grassland Soil
##MIGS-Data-END##

Global statistics

Total sequence length8,015,544
Total ungapped length8,013,824
Gaps between scaffolds0
Number of scaffolds111
Scaffold N50169,049
Scaffold L5016
Number of contigs120
Contig N50140,440
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)118

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,015,5441118,013,824169,04990
Support Center