U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



LGO_A23_AS7

Organism name:
Streptomyces wadayamensis (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: A23
BioSample:
SAMN02692260
BioProject:
PRJNA241453
Submitter:
University of Campinas
Date:
2014/06/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000698945.1 (latest)
RefSeq assembly accession:
GCF_000698945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JHDU01
Assembly method:
DNASTAR Ngen v. 3.1
Expected final version:
no
Genome coverage:
96.0x
Sequencing technology:
Illumina MiSeq

IDs: 182611 [UID] 1104028 [GenBank] 2036298 [RefSeq]

See Genome Information for Streptomyces wadayamensis

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/26/2014 18:57:49
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.4 (rev. 429283)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::5,592
CDS::5,463
Pseudo Genes::67
CRISPR Arrays::5
rRNAs::6 ( 5S, 16S, 23S )
tRNAs::36
ncRNA::20
Frameshifted Genes::56
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,056,006
Total ungapped length7,018,406
Gaps between scaffolds0
Number of scaffolds176
Scaffold N50109,945
Scaffold L5021
Number of contigs928
Contig N5015,752
Contig L50141
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)176

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,056,0061767,018,406109,9457520

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces wadayamensisStreptomyces wadayamensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004195735.1Streptomyces albidoflavustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.9593.1793.83

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly